Published RNA seq data

honey · 12-17-2010, 03:19 PM

I was wondering if the publications with RNA seq data are making there data accessible on NCBI or other databases? Is such data available for re- analysis
Thanks

simonandrews · 12-18-2010, 12:33 AM

Sure, just do a search for 'RNA-Seq' at http://www.ncbi.nlm.nih.gov/sra and you'll see a bunch of publicly available datasets.

colindaven · 12-18-2010, 03:20 AM

Some also post their data on GEO, I'm not sure which will be the preferred db in the future

http://www.ncbi.nlm.nih.gov/geo/

honey · 12-18-2010, 09:56 PM

Thanks for your help..

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12-17-2010, 03:19 PM	#1
honey Senior Member Location: Pittsburgh Join Date: Feb 2010 Posts: 151	Published RNA seq data I was wondering if the publications with RNA seq data are making there data accessible on NCBI or other databases? Is such data available for re- analysis Thanks

12-18-2010, 12:33 AM	#2
simonandrews Simon Andrews Location: Babraham Inst, Cambridge, UK Join Date: May 2009 Posts: 869	Sure, just do a search for 'RNA-Seq' at http://www.ncbi.nlm.nih.gov/sra and you'll see a bunch of publicly available datasets.

12-18-2010, 03:20 AM	#3
colindaven Senior Member Location: Germany Join Date: Oct 2008 Posts: 399	Some also post their data on GEO, I'm not sure which will be the preferred db in the future http://www.ncbi.nlm.nih.gov/geo/

12-18-2010, 09:56 PM	#4
honey Senior Member Location: Pittsburgh Join Date: Feb 2010 Posts: 151	Thanks for your help..