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Thread | Thread Starter | Forum | Replies | Last Post |
RNA-Seq: Full-length transcriptome assembly from RNA-Seq data without a reference gen | Newsbot! | Literature Watch | 7 | 10-26-2011 05:37 AM |
RNA-Seq: Detection of splicing events and multiread locations from RNA-seq data based | Newsbot! | Literature Watch | 0 | 10-26-2011 02:50 AM |
RNA-Seq: Composite Transcriptome Assembly of RNA-seq data in a Sheep Model for Delaye | Newsbot! | Literature Watch | 0 | 03-26-2011 02:02 AM |
RNA-Seq: Length Bias Correction for RNA-seq Data in Gene Set Analyses. | Newsbot! | Literature Watch | 0 | 01-22-2011 02:02 AM |
published ngs data and scripts | helprhelp | General | 2 | 01-06-2011 05:34 AM |
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#1 |
Senior Member
Location: Pittsburgh Join Date: Feb 2010
Posts: 151
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I was wondering if the publications with RNA seq data are making there data accessible on NCBI or other databases? Is such data available for re- analysis
Thanks |
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#2 |
Simon Andrews
Location: Babraham Inst, Cambridge, UK Join Date: May 2009
Posts: 869
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Sure, just do a search for 'RNA-Seq' at http://www.ncbi.nlm.nih.gov/sra and you'll see a bunch of publicly available datasets.
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#3 |
Senior Member
Location: Germany Join Date: Oct 2008
Posts: 396
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Some also post their data on GEO, I'm not sure which will be the preferred db in the future
http://www.ncbi.nlm.nih.gov/geo/ |
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#4 |
Senior Member
Location: Pittsburgh Join Date: Feb 2010
Posts: 151
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Thanks for your help..
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