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Old 09-28-2012, 06:06 AM   #1
ximo
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Location: spain

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Default Newbler exit status 9 error

Hi all

I am using Newbler 2.7 to asembly 454 and pair-end illumina sequences (runAssembly -cdna -mi 60 -short -cpu 48), but he has stoped with this message:

Error: An internal error (exit status 9) has occurred in the computation.
Please report this error to your customer support representative.

Could you help me with any suggestion?.

Thanks
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Old 10-07-2012, 12:26 AM   #2
Torst
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Location: The University of Melbourne, AUSTRALIA

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I've seen this happen before when combining 454 data with other data (Sanger, Illumina).

Does it occur if you don't include the Illumina reads?

Try "-large" to speed it up more too during the testing phase.
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Old 10-07-2012, 11:38 PM   #3
ximo
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Quote:
Originally Posted by Torst View Post
I've seen this happen before when combining 454 data with other data (Sanger, Illumina).

Does it occur if you don't include the Illumina reads?

Try "-large" to speed it up more too during the testing phase.
Thanks Torst,

But it seems that was a memory problem caused by other process. The newbler is running now without error from Thursday. The last message was the Thursday:

Building a tree for 284746760 seeds...
Computing alignments...
-> 44327000 of 44502441

Do you known if this is normal?

Thanks
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