Hi verybody. I have analyze my RNA-Seq Data using TopHat2/CufDiff. I´m not sure how filter this results (output CuffDiff). Because the genes with +/- inf have 0 reads in any condiction but the FPKM in the other sample is inconsistents. this means if you visualizes these genes in IGV i.e., there is a sample with 0 reads and the other one has many very few reads though the FPKM is high?????? Anyone can i help me.
Thanks in advance
regards
Thanks in advance
regards
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