Hi,
we have some mouse chip-seq data from 4 transcription factors (TFs) that we can look for possible binding sites or target genes for each TF.
Interestingly we found many binding sites overlaps among the 4 TFs by UCSC browser, however, UCSC browser cannot draw the whole picture of co-occupy of the genome with these 4 TFs data. A good example would be this Figure 1C (http://www.ncbi.nlm.nih.gov/pmc/arti...730/figure/F1/ . But it does not mention how to generate the picture.
Can anyone suggest a method to visualise the co-occupy of a genome (overlaps) from several Bed files from chip-seq experiments please?
many thanks.
we have some mouse chip-seq data from 4 transcription factors (TFs) that we can look for possible binding sites or target genes for each TF.
Interestingly we found many binding sites overlaps among the 4 TFs by UCSC browser, however, UCSC browser cannot draw the whole picture of co-occupy of the genome with these 4 TFs data. A good example would be this Figure 1C (http://www.ncbi.nlm.nih.gov/pmc/arti...730/figure/F1/ . But it does not mention how to generate the picture.
Can anyone suggest a method to visualise the co-occupy of a genome (overlaps) from several Bed files from chip-seq experiments please?
many thanks.
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