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Old 10-09-2013, 02:30 AM   #1
Location: Spain

Join Date: May 2012
Posts: 51
Smile NCBI standards for genome annotation after contig reduction

Hi community,

I have been using a bacterial draft genome from GenBank for RNA-seq project. In order to reduce genome contig number, I used L_RNA_scaffolder, so I had to reannotate again this new genome.

My doubt is how to publish now my RNA-seq results because I have the differential expressed genes with new annotations. I heard about the 'correspondence tables' but I really don't now how this work.

Thank you so much,

All the best, Bernardo
bernardo_bello is offline   Reply With Quote

annotaion file, contig, genbank

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