Hi there,
I have a particular library to analyse that pose a problem when trying to remove the adapters. The way the library was constructed require us to use "flash" to identify overlapping pair and merge them. This can results in a adapter being rebuild in the middle of the merged sequence.
Does anyone knows of a tool that will clip the adapter out and leave both side of the adapter?
I have tried cutadapt, FASTX but none seems to be able to keep both side of the adapter.
Thanks.
I have a particular library to analyse that pose a problem when trying to remove the adapters. The way the library was constructed require us to use "flash" to identify overlapping pair and merge them. This can results in a adapter being rebuild in the middle of the merged sequence.
Does anyone knows of a tool that will clip the adapter out and leave both side of the adapter?
I have tried cutadapt, FASTX but none seems to be able to keep both side of the adapter.
Thanks.
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