Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Segmentation fault, cuffdiff labrat73 Bioinformatics 12 03-22-2018 12:00 PM
soap segmentation fault scami Bioinformatics 6 04-17-2012 07:08 AM
Maq: Segmentation Fault mrxcm3 Bioinformatics 2 03-21-2011 03:43 PM
Dindel Segmentation fault srividya Bioinformatics 0 02-23-2011 09:32 PM
SOAP:segmentation fault Mansequencer Bioinformatics 1 11-19-2010 11:47 AM

Thread Tools
Old 02-16-2018, 08:42 AM   #1
Junior Member
Location: Boston, MA

Join Date: Feb 2018
Posts: 1
Question MosaikAligner:Segmentation Fault

Hi All!

I am trying to use MOSAIK to run an alignment of paired end reads sequenced with Illumina HiSeq. I notice that there are two ways to download MOSAIK: using git clone, or downloading from google code webpage.

I have noticed when downloaded with git clone, I get a segmentation fault error with MosaikAligner. MosaikBuild and MosaikJump work as expected but MosaikAligner throws an error. When downloaded from the google webpage, MosaikAligner works but runs very slowly and it is concerning to me that downloading it from the two different sources actually work differently.

Has anyone else experienced this issue with MOSAIK? Is there a full proof way of downloading it correctly?

I know there are other forums about segmentation fault errors with MOSAIK so I know this is common issue but there never seems to be a consensus as to what to do, so I wasn't sure if in the passing years an answer has come about, since the last post about this issue was in 2015.

Any advice is appreciated.

breciadouglas is offline   Reply With Quote

git clone, google code webpage, mosaik, mosaikaligner, segmentation fault

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 07:03 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO