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Old 04-21-2011, 10:15 AM   #1
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Location: USA

Join Date: Jan 2011
Posts: 105
Default Defining the path to BWA inside Stampy

I am in a situation where I have two folders inside my user home directory- one for BWA and one for Stampy.

When using -bwaoptions with Stampy, Stampy will not function without having a defined path to the BWA executable. My question is, how can I manually define this path to BWA?

I have looked through several of the Stampy python files, but have not noticed any clues.

Thanks for any help.

UPDATE: Now having a stronger grasp of linux I have realized what it means to define a path.

Last edited by oiiio; 06-02-2011 at 10:11 PM. Reason: FIXED
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