Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • MIRA3: setup BAMBUS Configuration File problem facing

    Regarding the paper "Instructions for scaffolding MIRA 454 contigs & 25 KB paired-end data with BAMBUS"
    Can I know how to fill in the figure or contents below?
    I got read the "configuration file help" at
    "http://sourceforge.net/apps/mediawiki/amos/index.php?title=Bambus_Manual#Getting_more_.28or_less.29_information_from_the_output"
    But still feel very confusing how to fill in the contents below:
    # Priorities
    priority ALL 1
    # The following lines can be un-commented to specify certain
    # per-library settings
    # Redundancies
    # redundancy lib_some 1
    # allowed error
    # error MUMmer 0.5
    # min group size
    mingroupsize 50000
    # Global redundancy
    redundancy 2
    # overlaps allowed
    # overlaps MUMmer Y

    Anybody know what is the main purpose we "setup BAMBUS configuration file"?
    Normally when we "setup BAMBUS configuration file", which data or file we should referred to?
    Can I find it at the *_info_assembly.txt file?
    Thanks a lot for all of your advice and suggestion

Latest Articles

Collapse

  • seqadmin
    Strategies for Sequencing Challenging Samples
    by seqadmin


    Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
    03-22-2024, 06:39 AM
  • seqadmin
    Techniques and Challenges in Conservation Genomics
    by seqadmin



    The field of conservation genomics centers on applying genomics technologies in support of conservation efforts and the preservation of biodiversity. This article features interviews with two researchers who showcase their innovative work and highlight the current state and future of conservation genomics.

    Avian Conservation
    Matthew DeSaix, a recent doctoral graduate from Kristen Ruegg’s lab at The University of Colorado, shared that most of his research...
    03-08-2024, 10:41 AM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, Yesterday, 06:37 PM
0 responses
7 views
0 likes
Last Post seqadmin  
Started by seqadmin, Yesterday, 06:07 PM
0 responses
7 views
0 likes
Last Post seqadmin  
Started by seqadmin, 03-22-2024, 10:03 AM
0 responses
49 views
0 likes
Last Post seqadmin  
Started by seqadmin, 03-21-2024, 07:32 AM
0 responses
66 views
0 likes
Last Post seqadmin  
Working...
X