Hi all,
I have RNA sequencing data (D. melanogaster) from 3 libraries (1-2Kb, 2-3Kb, 3-7Kb). What would be your suggestion for a mapper? I'm mostly interested in benchmarking isoform detection compared to illumina HiSeq2500. I'd like to do a benchmarking of the "established" tools (since I realized this knowledge is missing), but you can suggest new ones.
Thanks in advance for suggestions.
I have RNA sequencing data (D. melanogaster) from 3 libraries (1-2Kb, 2-3Kb, 3-7Kb). What would be your suggestion for a mapper? I'm mostly interested in benchmarking isoform detection compared to illumina HiSeq2500. I'd like to do a benchmarking of the "established" tools (since I realized this knowledge is missing), but you can suggest new ones.
Thanks in advance for suggestions.
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