Best NGS software!

melNGS · 09-27-2012, 04:42 AM

Hi,
I'm looking for the best NGS software (integrated solution) for Illumina. I've been using NextGene but I found not really user friendly....
We were thinking to buy CLC bio or Genomatix, but I don't know which one is the best for human resequencing (target enrichment and exome sequencing) but also for RNA-seq and Chip seq. I know that with CLC bio you can create your pipeline; can you do the same with Genomatix?

I accept any suggestions!!

Thanks!

Melissa

GenoMax · 09-27-2012, 04:48 AM

Melissa: You need to test these software packages out yourself. Ultimately what works for you in your specific environment will be more important that the advice you are going to get from subsequent responses in this thread.

Most software vendors will give you some sort of a trial license so you can make the judgement yourself.

Keep in mind that access to decent hardware to run the program you select will matter too.

mcvf · 09-28-2012, 12:02 AM

Hi Melissa,

The solutions from CLC bio can do all those analysis, you are referring to. And you can of course try it yourself with a demo-license, valid for 2 weeks. You are of course also more than welcome to contact our UK office to get more information etc.:

CLC bio, UK
17, Heol Y Gors,
Townhill,
Swansea,
United Kingdom
SA1 6SA
Telephone
Office: +44 7707 33 7272
E-mail
Main: info@clcbio.com
Sales: sales@clcbio.com

Best Regards,

Mikael Flensborg, CLC bio

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09-27-2012, 04:42 AM	#1
melNGS Member Location: London Join Date: Apr 2012 Posts: 12	Best NGS software! Hi, I'm looking for the best NGS software (integrated solution) for Illumina. I've been using NextGene but I found not really user friendly.... We were thinking to buy CLC bio or Genomatix, but I don't know which one is the best for human resequencing (target enrichment and exome sequencing) but also for RNA-seq and Chip seq. I know that with CLC bio you can create your pipeline; can you do the same with Genomatix? I accept any suggestions!! Thanks! Melissa

09-27-2012, 04:48 AM	#2
GenoMax Senior Member Location: East Coast USA Join Date: Feb 2008 Posts: 7,087	Melissa: You need to test these software packages out yourself. Ultimately what works for you in your specific environment will be more important that the advice you are going to get from subsequent responses in this thread. Most software vendors will give you some sort of a trial license so you can make the judgement yourself. Keep in mind that access to decent hardware to run the program you select will matter too.

09-28-2012, 12:02 AM	#3
mcvf Junior Member Location: Aarhus Join Date: Jun 2012 Posts: 2	Hi Melissa, The solutions from CLC bio can do all those analysis, you are referring to. And you can of course try it yourself with a demo-license, valid for 2 weeks. You are of course also more than welcome to contact our UK office to get more information etc.: CLC bio, UK 17, Heol Y Gors, Townhill, Swansea, United Kingdom SA1 6SA Telephone Office: +44 7707 33 7272 E-mail Main: info@clcbio.com Sales: sales@clcbio.com Best Regards, Mikael Flensborg, CLC bio