Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
what is the best software to use to analyze illumina NGS data? bbsinfo Illumina/Solexa 3 08-21-2013 05:48 AM
Looking to release software to the NGS community dp05yk Bioinformatics 0 12-23-2011 12:45 PM
Recommendation for windows NGS analysis software Hamid General 2 05-19-2011 11:00 AM
Ask for help :which software is better for NGS! huan General 2 10-23-2010 10:42 PM
Scaling Preformance of some NGS software SamCurt Bioinformatics 0 05-07-2010 09:14 AM

Thread Tools
Old 09-27-2012, 04:42 AM   #1
Location: London

Join Date: Apr 2012
Posts: 12
Default Best NGS software!

I'm looking for the best NGS software (integrated solution) for Illumina. I've been using NextGene but I found not really user friendly....
We were thinking to buy CLC bio or Genomatix, but I don't know which one is the best for human resequencing (target enrichment and exome sequencing) but also for RNA-seq and Chip seq. I know that with CLC bio you can create your pipeline; can you do the same with Genomatix?

I accept any suggestions!!


melNGS is offline   Reply With Quote
Old 09-27-2012, 04:48 AM   #2
Senior Member
Location: East Coast USA

Join Date: Feb 2008
Posts: 7,087

Melissa: You need to test these software packages out yourself. Ultimately what works for you in your specific environment will be more important that the advice you are going to get from subsequent responses in this thread.

Most software vendors will give you some sort of a trial license so you can make the judgement yourself.

Keep in mind that access to decent hardware to run the program you select will matter too.
GenoMax is offline   Reply With Quote
Old 09-28-2012, 12:02 AM   #3
Junior Member
Location: Aarhus

Join Date: Jun 2012
Posts: 2

Hi Melissa,

The solutions from CLC bio can do all those analysis, you are referring to. And you can of course try it yourself with a demo-license, valid for 2 weeks. You are of course also more than welcome to contact our UK office to get more information etc.:

CLC bio, UK
17, Heol Y Gors,
United Kingdom
Office: +44 7707 33 7272

Best Regards,

Mikael Flensborg, CLC bio
mcvf is offline   Reply With Quote

ngs software

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 05:21 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO