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06-22-2011, 08:19 AM
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Member
Location: Philadelphia, PA Join Date: Jun 2009
Posts: 16
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Unpaired reads in paired data
I have a paired read dataset in sam format. However some of the reads are unpaired with #0 a the end of their names. The flags indicate these are all optical duplicates. Why would I be missing the mate pair reads? Are the duplicates in the pair removed? Was the pair never sequenced?
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| data, paired, paired reads, reads |
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