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Old 06-23-2011, 08:58 AM   #1
Location: Ireland

Join Date: Jun 2011
Posts: 14
Default How to convert BED format to SAM/BAM?


I require a junctions file in SAM format and I have it in BED format. I was wondering is there a tool to convert BED to SAM or BED to BAM? (and I can then use samtools to complete the conversion from BAM to SAM).


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Old 06-23-2011, 09:11 AM   #2
Location: united kingdom

Join Date: Feb 2010
Posts: 63

You can try installing BEDTools and using bedToBam
poisson200 is offline   Reply With Quote

bed, sam

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