|
|
|
|
|||||||
Similar Threads
|
||||
| Thread | Thread Starter | Forum | Replies | Last Post |
| Converting FASTA/qual file pair from 454 to FASTQ | oiiio | Bioinformatics | 9 | 01-01-2016 04:55 PM |
| Unmatched read name error when converting csfasta to fastq with solid2fastq.pl | yksikaksi | Bioinformatics | 2 | 11-06-2011 09:18 PM |
| how to separate barcode libraries from csfasta and qual file | lei | Bioinformatics | 4 | 10-21-2011 07:38 PM |
| Error Bowtie with fastq files (from Solid .csfasta & .qual) | pepperoni | Bioinformatics | 0 | 10-12-2011 09:20 PM |
| fastq to csfasta and .qual | samt | SOLiD | 15 | 10-29-2009 10:11 AM |
 |
|
|
Thread Tools |
03-13-2012, 12:22 PM
|
#1 |
|
Member
Location: US Join Date: Oct 2011
Posts: 59
|
Script for converting fastq back to color csfasta and qual
Hello, does anyone know a script to convert a fastq file back to color csfasta and qual? The fastq file is in color (numbers, not double decoded) so I guess it must be simple, but I am not a programmer, so I was wondering if there is already something out there.
thanks |
|
|
|
03-14-2012, 08:59 AM
|
#2 |
|
Member
Location: salt lake city, UT Join Date: Apr 2010
Posts: 72
|
I wrote a script to do this here:
https://github.com/brentp/bowfast/bl...from-bfastq.py use the raw file from here: https://raw.github.com/brentp/bowfas...from-bfastq.py as: python csfasta-from-bfastq.py some.bfastq and it will write some_F3_QV.qual and some_F3.csfasta |
|
|
|
|
03-14-2012, 10:02 AM
|
#3 |
|
Member
Location: US Join Date: Oct 2011
Posts: 59
|
Thank you very much brentp
 )
|
|
|
|
|
| Tags |
| color, csfasta, fastq, qual, solid |
| Thread Tools | |
|
|
