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11-07-2012, 01:40 PM
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#1 |
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Member
Location: Boston, USA Join Date: Jan 2011
Posts: 20
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exon and intron numbers of genes
Hi All,
Please excuse me if this is going to be a repeat of any earlier post, I have been searching through various posts thinking someone must have asked this before but couldn't find. I have a bed file with genomic coordinates and I want to match with gene structure to find the exon and intron numbers of a gene that match/overlap the coordinates. Thanks for reading the post, I really appreciate for taking your time. Rama |
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11-07-2012, 02:06 PM
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#2 |
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Junior Member
Location: Belgium Join Date: Feb 2012
Posts: 4
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Hello Rama,
PeakAnalyzer will do it for you. If you work with human or mouse genome the annotation is also provided within the program. http://www.bioinformatics.org/peakan.../Main/Overview |
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11-07-2012, 02:12 PM
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#3 |
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Member
Location: Boston, USA Join Date: Jan 2011
Posts: 20
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Thank you, I never used it but sure will give a try.
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