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Old 12-19-2013, 12:18 AM   #1
fcarrillo
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Default RNASeq data-set for machine learning

Dear all,

I'm looking for an RNASeq data-set to test machine learning classification algorithms. Specifically, the set should contain >= 10 samples of at least two closely related groups and should be derived from higher eukaryotes.

Any suggestions or ideas would be great!

Last edited by fcarrillo; 12-19-2013 at 12:19 AM. Reason: Spelling
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Old 12-19-2013, 04:12 AM   #2
GenoMax
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Since you are in Europe your best bet may be to start at ENA: http://www.ebi.ac.uk/ena/data/search...NA-seq%20human

Use the advanced search to select candidates for consideration.
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Old 12-19-2013, 04:13 AM   #3
mastal
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Have a look in the public repository NCBI GEO (Gene Expression Omnibus),

http://www.ncbi.nlm.nih.gov/geo/
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Old 12-19-2013, 05:42 AM   #4
fcarrillo
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Thank you for the database links!

I was just wondering if there is a common used training data-set as there is for microarray based experiments (e.g. http://molonc.bccrc.ca/aparicio-lab/research/metabric/ used here: http://www.ploscompbiol.org/article/...l.pcbi.1002920).

If not, I guess I have to assemble one using the data-bases.

Last edited by fcarrillo; 12-19-2013 at 06:24 AM.
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classiffication, clustering, data, machine learning, rnaseq

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