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Old 02-21-2014, 04:03 AM   #1
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Location: Germany

Join Date: May 2010
Posts: 150
Default normalizing wig files


I have a script with multiple steps to analyse RNA-Seq data. One of the steps is running DESeq analysis over the count data, another one is to create wig files from the bam files for visualization.

For a meaningful graphs I would like to normalize the wig files.

Does it make sense to visualize them according to the size factors values for each sample from the DESeq analysis?

frymor is offline   Reply With Quote

deseq, normalization, rna seq, wig files

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