Go Back   SEQanswers > Applications Forums > De novo discovery

Similar Threads
Thread Thread Starter Forum Replies Last Post
Telomere filtering of MiSeq PE data winsettz Bioinformatics 2 02-01-2013 12:58 PM
Centromere (just wondering) Siva General 1 07-04-2011 04:22 PM

Thread Tools
Old 06-17-2017, 07:35 AM   #1
Junior Member
Location: india

Join Date: Jun 2017
Posts: 2
Default Denovo identification of Centromere and Telomere

Dear Member,

I am looking for any denovo tool or any idea to locate the centromere and telomere position in the chromosome of plant genome .

Although I have tried the blast for telomere but get few related information but for centromere still looking for any proper solution.

Any related suggestion is welcome!!

Thank you in advance!

Jassipox is offline   Reply With Quote
Old 09-17-2018, 01:30 PM   #2
Registered Vendor
Location: Seattle

Join Date: Aug 2018
Posts: 2

Hi Pawan,

There is a precedent for using Hi-C data to identify centromere locations (Accurate identification of centromere locations in yeast genomes using Hi-C)

This should be possible in plants as well - please PM me if you'd like to discuss further.
PhaseGenomics is offline   Reply With Quote
Old 04-09-2019, 07:09 AM   #3
Junior Member
Location: USA, NC

Join Date: Apr 2019
Posts: 6

Hi Pawan,

I also would highly recommend Phase Genomics' HiC approach to getting telomere and centromere information. Blasting for it may be tricky since those portions generally don't assemble well. That's changing. Adam Phillippy's lab and others are beginning to get resolutions in these regions.
JTH-Genome is offline   Reply With Quote

centromere, telomere

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 06:03 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO