Hello,
I have Illumina paired end reads of length 76bp.
The problem is that when I use fastq-dump to obtain two files with paired reads separated, it splits the reads into 101bp and 51bp rather that 76+76...
I tried with the options --split-files, --split-spot, --split-3 and always have the same result.
I also tried different fastq-dump versions: 1 ; 2 ; 2.3.4 and 2.3.5.2.
Do you have an idea how I can do that ?
Thanks !
I have Illumina paired end reads of length 76bp.
The problem is that when I use fastq-dump to obtain two files with paired reads separated, it splits the reads into 101bp and 51bp rather that 76+76...
I tried with the options --split-files, --split-spot, --split-3 and always have the same result.
I also tried different fastq-dump versions: 1 ; 2 ; 2.3.4 and 2.3.5.2.
Do you have an idea how I can do that ?
Thanks !
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