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  • #1

    Cuffdiff Data Analysis

    Hi Everybody,

    my name is Luca and I work in NY at Albert Einstein Medical College as Postdoc.
    Part of my project will be to analyze the results coming from a RNAseq experiment on myeloid cells.

    The allignment data are good after TopHat and Cufflinks. The bioinformatic facility gave me a huge file containing the Cuffdiff statistics.
    this file contains all the genes with their KPFM.

    How should i prodeed now?

    I would like to have a list of genes stat differentially modulated, the total number of transcripts encoded, the number of unannotated genes..

    Anyone can help me please?

    Luca
    Tags: cuffdiff, cufflinks, illumina, tophat
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