Hello guys!
I'm starting to work with bean's RNAseq, and I want to undertand what king of file I'll use the index to the reference genome. Will be the fasta file or GTF/GFF?
I understood that the fasta file is used to create the index by bowtie2 and GFF/GTF is used to run in tophat, but both are the genome of reference?
thanks for the attention!!
I'm starting to work with bean's RNAseq, and I want to undertand what king of file I'll use the index to the reference genome. Will be the fasta file or GTF/GFF?
I understood that the fasta file is used to create the index by bowtie2 and GFF/GTF is used to run in tophat, but both are the genome of reference?
thanks for the attention!!
Comment