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Old 06-03-2016, 08:30 AM   #1
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Location: Taipei

Join Date: Aug 2015
Posts: 6
Post Basic and nieve Question in lncRNA analysis pipeline


I have been analyzing RNA-Seq data sets of some Breast cancer cell lines to create a high confidence list of expressed lncRNAs. However as, I am new to NGS, I cannot figure out how do I filter out the known Expressed gene/protein coding transcripts from my annotation file after cufflinks assembly? Are there any specific tools to do the filtering? If anyone could help me regarding this, I will really appreciate.

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lncrna, ngs, pipeline, rna-sequencing

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