SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Finding two strains of a genome having SNPs/SNVs in their repeat regions smh.oloomi Genomic Resequencing 0 06-10-2017 09:52 PM
Finding contig repeat counts by mapping contigs to the reference genome misagh Bioinformatics 1 01-09-2014 06:41 AM
Finding and segregating low-complexity regions coding the genome Genomics101 Bioinformatics 0 12-19-2013 10:42 AM
Detecting SNPs, SNVs using CLC genomics wqorkbench NGS_New_User Bioinformatics 0 10-10-2012 07:20 AM
Finding *new* regions of DNA in genome assemblies green tree De novo discovery 5 02-20-2012 03:19 PM

Reply
 
Thread Tools
Old 06-10-2017, 10:04 PM   #1
smh.oloomi
Junior Member
 
Location: Melbourne, Australia

Join Date: Jun 2017
Posts: 2
Question Finding two strains of a genome having SNPs/SNVs in their repeat regions

How can I find two strains of a haploid or diploid genome that the differences between the two strains includes some SNPs / SNVs in their repetitive regions?

I'm going to use one strain as target genome and download DNA sequencing reads for that strain, and map it to the other strain as the reference genome.
smh.oloomi is offline   Reply With Quote
Reply

Tags
read mapping, reference genome repeats, repeat region, sequencing data, snp data

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 04:24 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO