Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Error 137 Mauve phermy Bioinformatics 1 06-14-2017 08:27 PM
How to get complete consensus genome from ordered contigs developed from Mauve? hellsingwyk Bioinformatics 3 02-01-2015 04:08 PM
mauve-snps mmmm Bioinformatics 4 05-30-2014 08:54 AM
Mauve Contig Mover hiren Bioinformatics 0 07-10-2013 04:53 AM
Query regarding contigs order by Mauve contig mover neha Bioinformatics 0 01-02-2013 03:46 AM

Thread Tools
Old 06-18-2017, 07:33 PM   #1
Location: US

Join Date: Feb 2011
Posts: 24
Default MAUVE reordered contigs

Hi all,

Forgive me if this had been asked before. Here is my question:

I am going to use mauve to make a multiple genome alignment figure. I have one reference genome and four assembled draft genome contigs. If I simply do the multiple alignment all together, the final figure was mess.

Then I am thinking to do the config reordering for every draft genome, based on the reference. Then use four reordered contig files to do the alignment against reference to generate the final figure.

I am not sure if this is a good solution for my goal. Any comment is welcome. But at the moment, when I finished contig reorder, there wasn't a reordered contig file under the result folder, only alignment and .tab file and index file. Is there a way to generate reordered contig fasta?

I appreciate any of your suggestion. Thanks!


Last edited by doublealice; 06-18-2017 at 07:46 PM.
doublealice is offline   Reply With Quote


Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 04:56 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO