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Old 05-05-2011, 01:46 PM   #1
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Default Any pipeline program to analyze CHIP-Seq data

I am new to CHIP-Seq data analysis, we are comparing the efficiency of different antibodies in CHIP experiment. Any one can recommend a pipeline program for those kind of analysis? such as what program for sequencing data alignment, which program for peaking calling or what program to compared the CHIP from the different antibodies
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Old 04-01-2014, 05:49 PM   #2
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Bailey T, Krajewski P, Ladunga I, Lefebvre C, Li Q, et al. (2013) Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data. PLoS Comput Biol 9(11): e1003326. doi:10.1371/journal.pcbi.1003326 PubMed, PMC
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