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Old 07-12-2009, 08:42 AM   #1
Location: new orleans

Join Date: Jun 2009
Posts: 12
Default Question about GEF3 file

Hi all,

Does anybody know where I can download a GFF3 annotation file for human?

I am trying to use a GFF3 annotation file for human to generate the <GFF3_file>.expr with the Tophat. But I don't know if there is a straight way to obtain a GFF3 annotation file for human.

Any response would be really appreciated!

Last edited by iloveneworleans; 07-12-2009 at 01:40 PM.
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Old 08-04-2009, 06:24 AM   #2
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Location: Kansas City, MO

Join Date: Aug 2009
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You can download a gtf annotation file from Ensembl and convert it to a gff3 file with the gtf2gff3 converter from
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