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Old 03-10-2013, 01:58 PM   #1
danwiththeplan
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Location: Auckland

Join Date: Sep 2011
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Default Pipeline + test datset for RNAseq with ERCC controls?

I'm putting together a pipeline to automate the process of analysing ERCC spike-in RNA controls in an RNAseq experiment. Just wondering if anyone is aware of publically available test datasets that could be used for this?
e.g. an Illumina / Ion torrent /454 RNAseq run where the ERCC controls have been added?
EDIT: answered my own question: just go to the SRA and search for "ERCC".
Curious if anyone has established pipelines to automate analysis of ERCC controls?

Last edited by danwiththeplan; 03-10-2013 at 02:03 PM.
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