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Old 03-30-2011, 01:29 AM   #1
rwenang
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Location: Singapore

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Default CLIP-seq dataset

Dear All,

I'm currently working on a HITS-CLIP project in our lab, and we wanted to do some comparison with previous projects. However, I just found out that I cannot find/download the datasets from two important papers (not available in SRA or their companion websites, tried to contact the authors but apparently they have left the institute).

1. Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
2. Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps.

Does anybody know where I can download these datasets / or have a local copy? thanks in advance.
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Old 11-12-2013, 08:33 AM   #2
rnaNGS
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Default HITS-CLIP (PAR-CLIP, CLIP-Seq, iCLIP, CLASH) datasets.

You can download HITS-CLIP (PAR-CLIP, CLIP-Seq, iCLIP, CLASH) data from starBase download center (http://starbase.sysu.edu.cn/download.php).
It provides 108 HITS-CLIP datasets generated from various tissues or cell lines under different treatments in 37 independent studies.
It systematically identified the RNA-RNA and protein-RNA interaction networks from these HITS-CLIP data.
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