Hi i am using DEseq with no replicates
i have four sample "A-Mock", "A-Infect", "B-Mock", "B-infect" with no replicates.
> conds <- factor( c( "A-Mock", "A-Infect", "B-Mock", "B-infect" ) )
i need to compare the diff expression between A-mock and A infect similarly B mock B infected. It doesnt seem to work i am using
res <- nbinomTest( cds, "A-mock", "A-infect", )
> res <- nbinomTest( cds, "B-mock", "B-infect", )
but at the end i am getting only one p value. How to solve this problem. Please help
i have four sample "A-Mock", "A-Infect", "B-Mock", "B-infect" with no replicates.
> conds <- factor( c( "A-Mock", "A-Infect", "B-Mock", "B-infect" ) )
i need to compare the diff expression between A-mock and A infect similarly B mock B infected. It doesnt seem to work i am using
res <- nbinomTest( cds, "A-mock", "A-infect", )
> res <- nbinomTest( cds, "B-mock", "B-infect", )
but at the end i am getting only one p value. How to solve this problem. Please help
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