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Old 09-04-2014, 11:14 PM   #1
chayan
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Default Editing genome assemblies with Cytoscape

Hi All,

I have performed a metagenomic assembly from Ion-Proton reads. Now I want to check my assembly using Cytoscape for probable misassembles. I found a very usefull guide in the folowing link

http://cmegenomics.wordpress.com/tut...subscription-2

But according to the manual i need a small python script SAM_to_file.py to process the SAM file finally before the Cytoscape take it as an input. But could not find the same script any where in the web. Can any one please suggest me where to find the same or any other usefull information about this???

Thanks for any help in advance

Best
chayan
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Old 09-05-2014, 03:04 AM   #2
GenoMax
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This question has been answered by the developers at the link above.
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Old 09-05-2014, 11:10 AM   #3
chayan
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Yes they have responded to my request..thanks for your reply
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bioinformatic tools, file format conversion, metagenomic assembly, next gen sequencing data, sam file

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