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Old 01-14-2015, 02:06 AM   #1
bsp022
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Default Free alternative to KEGG

Hi, I'm trying to do some functional analysis on a metagenomic dataset and I'd like to be able to assign my hits to pathways/modules. All the papers I've seen have used KEGG for this step, but it's no longer free (unfortunately I don't have 2000 to spare!), and most of the suggested alternatives in other threads seem to be specific to model organisms.

Can anyone recommend a database of pathways suitable for use with metagenomic gene annotations?
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Old 01-14-2015, 03:09 AM   #2
GenoMax
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Try: http://www.microme.eu/
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Old 01-14-2015, 04:22 AM   #3
yzzhang
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for metagenome functional analysis, you can try FOAM http://portal.nersc.gov/project/m1317/FOAM/
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