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Old 12-10-2016, 02:30 AM   #1
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Location: Karachi, Pakistan

Join Date: Dec 2016
Posts: 3
Exclamation Taipan !!!!!!!!!

Unable to run taipan assembler, it reads the paired end fastq file then stops

./taipan -f datafastq/sg/Myco/abc/ERR486827.fastq -k 10 -t 10 -o 2 -v 0 -c 100
Screen shows

Reading sequences initiated
i:398381, s:0, tm:116.34, mtf:0/0,  E Skip
Command exited with non-zero status 139
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Old 12-12-2016, 03:23 AM   #2
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Location: East Coast USA

Join Date: Feb 2008
Posts: 6,975

That does not look like a paired end file (unless the reads are interleaved into one file).
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