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Old 06-16-2017, 05:36 AM   #1
ac91
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Location: porto

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Default Biomart - export the highest transcript

Hi,

Does anyone know if it is possible to export a specific transcript from biomart? I just want to export the highest one.

Thanks!
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Old 06-16-2017, 06:07 AM   #2
GenoMax
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Default

You may need to get the transcripts (include the "transcript length" in your header options) and then parse for the longest version.

Take a look at this thread (http://seqanswers.com/forums/showthread.php?t=63408) and the site (http://appris.bioinfo.cnio.es/#/) mentioned there in.
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