SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Redundancy vs. Artifacts in de novo transcriptomes tboothby Bioinformatics 1 09-08-2013 10:20 AM
How to collapse sequences excluding sequencing artifacts? (454) Yevaud Bioinformatics 3 01-30-2013 07:59 AM
De-duplicate to remove PCR artifacts in BS-seq data Jerry_Zhao Bioinformatics 2 05-11-2012 12:45 PM
sequencing artifacts passing GATK's ApplyRecalibration filters efoss Bioinformatics 4 04-04-2012 08:55 AM
Non uniform gene coverage and Cufflinks predictions : artifacts ? hugo D RNA Sequencing 0 03-02-2011 08:04 AM

Reply
 
Thread Tools
Old 06-21-2017, 06:05 AM   #1
Flo2000
Junior Member
 
Location: Germany

Join Date: Jan 2017
Posts: 3
Default Remove IonTorrent artifacts

I am using an analysis pipeline which works pretty fine for Illumina data. I am now trying to adapt it for IonTorrent. Is there a tool which can be used to filter out typical artifacts in repeat regions? Or a variant caller that doesn't call these?
Flo2000 is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 12:06 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO