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Old 03-25-2019, 06:39 AM   #1
titti
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Location: USA

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Default PWM in R

I am new to the field and want to know how to write script in R to do Position Weight Matrix, find frequency matrix using count matrix and fasta files
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Old 03-25-2019, 08:07 AM   #2
luminasapientiae
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Hi titti
First of all, try to consult the bioconductor repository to find a package that is suitable for your needs (https://www.bioconductor.org) as you are new to bioinformatics, there is support lessons in 'help' that could be useful.
I found this package that looks interesting (https://www.bioconductor.org/package...PWMEnrich.html) and here is the manual https://www.bioconductor.org/package.../PWMEnrich.pdf
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Old 03-26-2019, 08:07 AM   #3
titti
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THANK YOU SO MUCH. The help is much appreciated and is quiet useful.

Last edited by titti; 03-26-2019 at 08:13 AM.
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