Hi Folks,
I have a SAM file with unpaired reads (originally from a FASTQ) and I would like to use it to pull the read and its pair from the FASTQ file - does anyone know if there is a script out there to do this?
I have used the Picard tools SamToFastq but to my knowledge there is not a script in Picard or SamTools to do exactly what I described here (or maybe there is and I just haven't found it!).
Thank you!
I have a SAM file with unpaired reads (originally from a FASTQ) and I would like to use it to pull the read and its pair from the FASTQ file - does anyone know if there is a script out there to do this?
I have used the Picard tools SamToFastq but to my knowledge there is not a script in Picard or SamTools to do exactly what I described here (or maybe there is and I just haven't found it!).
Thank you!
Comment