Hi,
I want to extract the quality scores of certain contigs from a 454.qual-file. The file looks like this:
>contigs003410
27 27 30 64 64 64 64 64 64 64
64 64 64 64 64 19 64 64 64 64
64 64 64 64 64 64 64 64 64 64
64 64 64 64 64 20 64 64 64 64
64 64 7 7
>contigs003411
19 18 30 64 64 64 64 64 64 64
64 64 64 64 64 19 64 64 64 64
64 64 64 64 12 64 64 64 64 64
64 64 64 64 64 20 64 64 64 64
64 64 64 64
and so on
For the fasta type. I used the the NCBI Blast Command Line Tools. But for this kind of files they don't work.
Does anybody have a unix command for this?
Thanks, anna.
I want to extract the quality scores of certain contigs from a 454.qual-file. The file looks like this:
>contigs003410
27 27 30 64 64 64 64 64 64 64
64 64 64 64 64 19 64 64 64 64
64 64 64 64 64 64 64 64 64 64
64 64 64 64 64 20 64 64 64 64
64 64 7 7
>contigs003411
19 18 30 64 64 64 64 64 64 64
64 64 64 64 64 19 64 64 64 64
64 64 64 64 12 64 64 64 64 64
64 64 64 64 64 20 64 64 64 64
64 64 64 64
and so on
For the fasta type. I used the the NCBI Blast Command Line Tools. But for this kind of files they don't work.
Does anybody have a unix command for this?
Thanks, anna.
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