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Old 04-30-2014, 10:54 AM   #1
mhkiani
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Location: Texas

Join Date: Oct 2013
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Default total count filter cutoff in edgeR

I'm using edgeR for analysis of may data and I'm not sure what total count filter value cutoff value I should use, My reads are paired 50bP reads and total reads per sample is about 80,000,000. I tried cutoff values of 5,10,15,30,50 and 100 and I only saw differences between 50 and 100 but still looking for logical reason to choose the cutoff value.

Appreciate your help,
Mahnaz
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