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Old 06-20-2016, 09:47 AM   #1
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Location: columbia, missouri

Join Date: Oct 2015
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Default CummeRbund, extracting only one chromosome

So I'm new to R and want to create a scatterplot with cummeRbund that has only chr8 plots.

> csScatter(genes(cuff_data), 'S1', 'S2')

I feel like there's a line of code I'm missing to specify a chromosome.
I've also tried a different way; when I only did tophat and cuffdiff for chr8 reads, my graph in cummeRbund had x and y axis labeled as 10, 1000 etc on one axis and then 1e1, 1e3 etc on the other. I want both axis to be 10, 1000 etc, not mixed. Any help is appreciated.

Thank you!

Last edited by ajsn6c; 06-21-2016 at 04:43 PM.
ajsn6c is offline   Reply With Quote

cummerbund, cummerbund plots, r programming

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