Hi guys,
I am trying to make some somatic calling using ( varscan / mpileup ) a tumor
sample from whole exome sequencing data and Normal sample from whole
genome data.
Size of the BAM files
Whole exome tumor ( 6.7 gb )
Whole genome tumor ( 18 gb )
I have ~6 million calls from this procedure.
I was wondering is it appropriate to perform somatic calling with two samples from
different platform.
thanks in advance,
Mamun
I am trying to make some somatic calling using ( varscan / mpileup ) a tumor
sample from whole exome sequencing data and Normal sample from whole
genome data.
Size of the BAM files
Whole exome tumor ( 6.7 gb )
Whole genome tumor ( 18 gb )
I have ~6 million calls from this procedure.
I was wondering is it appropriate to perform somatic calling with two samples from
different platform.
thanks in advance,
Mamun
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