SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
how to convert general fastq to fastq int format? feng Bioinformatics 21 07-03-2014 11:40 PM
For MAQ: Is there a Tool to convert sanger-format fastq file to illumina-fotmat fastq byb121 Bioinformatics 6 12-20-2013 01:26 AM
fastq format newBioinfo Illumina/Solexa 7 09-27-2012 11:31 AM
Question about using sra_toolkit to transform the SRA format into FASTQ format areyousad Bioinformatics 0 05-16-2010 10:56 PM
how to tell fastq format before and after pipeline 1.3 yuanlang Bioinformatics 1 09-27-2009 09:51 AM

Reply
 
Thread Tools
Old 08-27-2021, 08:45 AM   #1
andrew0402
Junior Member
 
Location: macau

Join Date: Aug 2021
Posts: 1
Default Stringtie product is in fastq format...

I first used hisat2 and successfully align the SRA sequence to the reference genome, then used stringtie for the annotation. The script is as follow:



The code run smooth without any error generated, however, the product from stringtie is in fastq format instead of gtf. May I know is there any mistake in my script that make the gtf file cannot be produced?

Many thanks!
andrew0402 is offline   Reply With Quote
Reply

Tags
stringtie

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 01:55 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO