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Old 08-27-2021, 08:45 AM   #1
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Default Stringtie product is in fastq format...

I first used hisat2 and successfully align the SRA sequence to the reference genome, then used stringtie for the annotation. The script is as follow:

The code run smooth without any error generated, however, the product from stringtie is in fastq format instead of gtf. May I know is there any mistake in my script that make the gtf file cannot be produced?

Many thanks!
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