SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Finding splice sites: TopHat and SOAPsplice export empty junction files jgw RNA Sequencing 0 01-31-2012 11:04 AM
looking for file with known human splice donor and acceptor sites efoss Bioinformatics 2 01-15-2012 08:38 AM
splice sites-annotation rudi283 Bioinformatics 0 09-23-2011 04:36 AM
reference sequence - splice sites marada General 2 02-11-2010 05:08 AM

Reply
 
Thread Tools
Old 01-06-2012, 07:55 AM   #1
bbsinfo
Member
 
Location: Mars

Join Date: Apr 2011
Posts: 19
Default recomend a software to detect splice sites on plant genes?

Hello, I need a software for me to use to detect splice sites on genes to find introns on genes.
I find a website http://genes.mit.edu/GENSCAN.html

which is for vertebrate, and maize.

I am working with plants. the website above does not seem to work well with my organism. or I did not setup the correct parameter for it to work
what is Suboptimal exon cutoff? what number shall i set up to?

any suggestions? many thanks

Last edited by bbsinfo; 01-06-2012 at 07:59 AM.
bbsinfo is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 09:56 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO