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Old 02-17-2012, 09:15 PM   #1
rzhang
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Default raw data of paper "The evolution of gene expression levels in mammalian organs"

I am just wondering if anyone know where the raw data of the paper titled "The evolution of gene expression levels in mammalian organs" in Nature is.

I try to get the raw sequence data via the GSE number (GSE30352) supplied in the paper; however I found that for most samples, it is shows that the data is not loaded yet (for example: http://www.ncbi.nlm.nih.gov/sra?term=SRX081869).

Thanks
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Old 02-18-2012, 05:31 PM   #2
adaptivegenome
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Quote:
Originally Posted by rzhang View Post
I am just wondering if anyone know where the raw data of the paper titled "The evolution of gene expression levels in mammalian organs" in Nature is.

I try to get the raw sequence data via the GSE number (GSE30352) supplied in the paper; however I found that for most samples, it is shows that the data is not loaded yet (for example: http://www.ncbi.nlm.nih.gov/sra?term=SRX081869).

Thanks
Did you ask the authors?
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Old 02-18-2012, 06:33 PM   #3
rzhang
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Originally Posted by genericforms View Post
Did you ask the authors?
I asked the authors but I have not received the feedback yet.
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Old 02-23-2012, 03:21 PM   #4
srasdk
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Try SRA now:
http://trace.ncbi.nlm.nih.gov/Traces...tudy=SRP007412
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Old 02-24-2012, 02:12 AM   #5
tir_al
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You can also dowload it fro ENA:
http://www.ebi.ac.uk/ena/data/view/SRP007412

They have a nice .tsv description file of the whole experiment, which can be used to automate the download.
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Old 02-27-2012, 05:08 PM   #6
rzhang
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Thanks your guys for the information! Now I can access the raw data, however I found that the base quality of the reads are very low (usually between 20). Is there anything wrong?
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