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Old 12-10-2012, 11:23 AM   #1
Avro1986
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Default How to index a genome for BLAST

Hi everyone!

I have just installed BLAST+ 2.2.27 on my mac. I want to run some cDNAs against arabidopsis thaliana's genome. I know I need to download the genome and format it for BLAST searches but I don't know how.

I would greatly appreciate any help.

Thank you very much for your time!
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Old 12-10-2012, 12:25 PM   #2
ucpete
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makeblastdb -in <genome.fasta> -dbtype nucl
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Old 12-10-2012, 12:49 PM   #3
Avro1986
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Thank you!
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