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Old 02-02-2013, 09:31 PM   #1
tahamasoodi
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Default Annotation with dbSNP

Hi,
I've seen that some people annotate their sequencing data with dbSNP135_common (contains variants with allele frequency >1%) and dbSNP135_full (contains all types of variants including disease variants also). I'm using annovar for my data, is there any way to do this in annovar? Where can I download these two versions?

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Old 12-04-2013, 08:12 PM   #2
rajesh_mahato
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Hi,

You can download dbSNP135_common and dbSNP135_full from UCSC table browser.

http://genome.ucsc.edu/cgi-bin/hgTables?command=start

select Group --> variation and repeats ---> select dbSNP135_common

If you need further help in getting data please write me mail at rajesh9042@gmail.com.

thanks

Last edited by rajesh_mahato; 12-04-2013 at 08:14 PM.
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