I have downloaded BamTools 2.17.0 onto my mac OS X 10.5.8 and installed using terminal
I copied all files I want to work with into the bin folder
When in terminal I moved into the bin folder
I can see bedtools
if I manually drag bedtools into the terminal it gives me a description of all the things it can be used for
however anything I type in gets a 'command not found error'
I am trying to run the line
bedtools coverage -hist -abam sample6.bam -b ampfinal.bed >result.txt
when I type this I get:
-bash: bedtools: command not found
I copied all files I want to work with into the bin folder
When in terminal I moved into the bin folder
I can see bedtools
if I manually drag bedtools into the terminal it gives me a description of all the things it can be used for
however anything I type in gets a 'command not found error'
I am trying to run the line
bedtools coverage -hist -abam sample6.bam -b ampfinal.bed >result.txt
when I type this I get:
-bash: bedtools: command not found
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