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Old 09-12-2013, 05:02 AM   #1
Krosh
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Default From 16S to genome

I have a lot of 16S rRNAs ID and it is necessary to obtain whole bacterial genomes if it exists or all bacterial genes (ID or fasta).
Is it possible to automate?
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Old 09-12-2013, 05:57 AM   #2
rhinoceros
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What IDs do you have? GIs?
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Old 09-12-2013, 06:47 AM   #3
Krosh
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Yes, Gene IDs
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Old 09-12-2013, 07:08 AM   #4
rhinoceros
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So basically you need to link GIs to NCBI taxon IDs. I think NCBI might even maintain such a file in their FTP. Otherwise, use eutils..
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