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Old 10-20-2013, 05:58 PM   #1
Mayflower
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Location: SG

Join Date: Oct 2013
Posts: 5
Default How to predicate miRNA target without a reference genome

Hi, guys

I am trying to predicate miRNA target from a fish species. I have sequenced small RNA and mRNA and then proceed to do the de novo assembly to get the transcriptome. There is no whole genome sequence available for this fish. Any idea about how to predicate the miRNA target without genome sequence and degradome? Thank you so much!
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