SEQanswers

Go Back   SEQanswers > Applications Forums > RNA Sequencing



Similar Threads
Thread Thread Starter Forum Replies Last Post
how to convert UCSC gene names to gene symbol gigigou Bioinformatics 5 05-19-2015 04:23 AM
Converting chromosome names in gtf file cnyh Bioinformatics 1 05-06-2013 07:00 AM
GTF file with one line per gene? cnyh RNA Sequencing 3 03-06-2013 08:36 AM
GTF file from UCSC with Gene name??? golharam General 2 09-17-2012 11:28 AM
converting UCSC gene names to Hugo Symbol names efoss Bioinformatics 2 07-16-2011 12:41 PM

Reply
 
Thread Tools
Old 05-05-2016, 02:11 AM   #1
yaseen.ladak
Junior Member
 
Location: Cambridge

Join Date: Nov 2013
Posts: 7
Default How can Cuffnorm output give gene names in addition to gene id from input GTF file

Hi All,

I need a little help, the output of cuffnorm from the genes.fpkm_table file is as follows:

tracking_id q1_0 q2_0
ECDH10B_0001 0 0
ECDH10B_0002 12.7841 26.1493
ECDH10B_0003 20.8691 21.9675
ECDH10B_0004 25.1604 47.0917

How can I include the gene name in the output file in addition to the gene id which is also present in the input GTF file that I am using from ensembl. I am not discovering any new novel transcripts.

Can any one please help.

Thank you
Yaseen
yaseen.ladak is offline   Reply With Quote
Old 05-05-2016, 06:15 AM   #2
fanli
Senior Member
 
Location: California

Join Date: Jul 2014
Posts: 198
Default

Cross-posted with https://www.biostars.org/p/190114/#190158
fanli is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 04:42 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO