SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
comparative genomics with a human pseudogene stephenhart Bioinformatics 0 10-11-2011 12:45 AM
Conference - Workshop Comparative and Regulatory Genomics in Plants klaas.vandepoele Events / Conferences 1 03-28-2011 09:29 PM
Workshop on Comparative Genomics, Europe 2011 shandley Events / Conferences 0 09-23-2010 12:16 PM
Bioinformatics Scientist, Comparative Bacterial Genomics Broad HR Academic/Non-Profit Jobs 0 07-14-2010 07:40 AM
Comparative Genomics Patent... Genomatix Vendor Forum 0 04-21-2009 11:34 AM

Reply
 
Thread Tools
Old 09-21-2010, 04:03 AM   #1
pDNA
Junior Member
 
Location: austria

Join Date: Apr 2010
Posts: 3
Default Software for comparative genomics of prokaryotes

Dear people,

can somebody suggest some software tool for comparative genomics of bacteria? It would be great to have a standalone software that is not web-based. I'm looking for a tool that is able draw synteny plots, can take the annotation of a reference genome and apply it to the new assembled sequence.
Additional it would be great to have a software that can connect the synteny with the sequence (like the Synmap and Gevo).

Maybe some can help!

Many thanks in advance!

Best regards,
p
pDNA is offline   Reply With Quote
Old 04-19-2012, 04:24 PM   #2
ajendrex
Junior Member
 
Location: Santiago, Chile

Join Date: Apr 2012
Posts: 1
Default What software are you using, if any?

I am looking for the different options that there are for doing the sames tasks that you mentioned in your question. Could you or anyone help me improving the list that I have so far?

MUMmer http://mummer.sourceforge.net/
CoGe http://genomevolution.org/CoGe/index.pl
Vista tools http://genome.lbl.gov/vista/index.shtml
ajendrex is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 03:11 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO